PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16760_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 737aa    MW: 81824.1 Da    PI: 6.4668
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16760_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.51.1e-22127228199
                                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                 f k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +
  Cotton_A_16760_BGI-A2_v1.0 127 FYKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVA 207
                                 789****************************8544444..48***************************************** PP

                                 T-EEEEEE-SSSEE..EEEEE-S CS
                          B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                                 gD+v+F   ++++ +l+++++r+
  Cotton_A_16760_BGI-A2_v1.0 208 GDSVLFI--WNEKNQLLLGIRRA 228
                                 *******..8899999****997 PP

2Auxin_resp117.79.6e-39253336183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                                 aahaa+t+s F+v+YnPras+s+F+++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+s ldpvrWpnS+Wrs+
  Cotton_A_16760_BGI-A2_v1.0 253 AAHAAATNSCFTVFYNPRASPSDFIIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISSLDPVRWPNSHWRSV 335
                                 79********************************87599******************************************98 PP

                  Auxin_resp  83 k 83 
                                 k
  Cotton_A_16760_BGI-A2_v1.0 336 K 336
                                 5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-40120242IPR015300DNA-binding pseudobarrel domain
CDDcd100178.47E-21126227No hitNo description
SMARTSM010196.4E-22127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421127229IPR003340B3 DNA binding domain
PfamPF023625.3E-21127228IPR003340B3 DNA binding domain
PfamPF065078.5E-34253336IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MKLSASGQGQ QAHEGENKCL NLELWHACAG PLVCLPTVGT RVVYFPQGHS EQVAATTNKE  60
VDTHIPNYPD LPPQLICQLQ NVTMHADVET DEVYAQMSLQ PLTPEEQKGA FLPMELGIPS  120
KQPTNYFYKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDIEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTVFYNPR ASPSDFIIPL SKYVKAVFHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS SLDPVRWPNS HWRSVKVGWD ESTTGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWHPG SSSLFDNRDD ISNGLTWLRG GSGEQGLQSL NLQSFCSYPW  420
MQQKLDLSFP GNDYNLQYQH MLANGLQNLG SGDPPRQQLQ QSFQYVQQPG SHNLLLQQQQ  480
QQQQQQQSVS QLVPHNIVQA QQSIIRIESF LPVPGREQVG NQSEEQAQQQ HNMTQSDQLQ  540
QRRQLNVPSS FLKPDFIDSG SGPPVLDMLG SLCPESSANL LNFSTTGQSM LADQLPQLSW  600
APKYAHLNVN TFAGSTSVPQ VSPGKDATVE LDIGTSDAQN STFFGVNDDS FGLLLPTSMR  660
GFTTSSSEAD MPSIPLGDPS FQNPLYGCMQ YSSELQSTGQ VDPPTSSRTF IKLPFGDLIP  720
VLAAANREAR GSPLANL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1572035751388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488004.10.0PREDICTED: auxin response factor 8-like isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A0D2PUM80.0A0A0D2PUM8_G
STRINGGLYMA14G38940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8